DESeq2 install --- 如何安装R包("RcppArmadillo")？ - 开发者知识库 Following pre-processing using kallisto and bustools and basic QC, the notebook demonstrates some initial analysis. The package will formally test two curves represented by discrete data sets to be statistically equal or not when the errors of the two curves were assumed either equal or not using the tube formula to calculate the tail probabilities: curvHDR: Filtering of Flow Cytometry Samples: cusp: Cusp-Catastrophe Model Fitting Using Maximum Likelihood OmicSelector: Basic Functionality Tutorial. - GitHub Pages Predictors of Thailand summer (August-October) monsoon rainfall are identified from the large‐scale ocean-atmospheric circulation variables (i.e. You do not have to specify the default tree in R_LIBS. 解决：安装R包时，经常提示"package 'readr' is not available (for R version 3.5.1)"的问题 安装R包时，我一般采用两种方法： 方法1： R - kallisto | bustools ERROR: compilation failed for package. Seasonal forecasting of Thailand summer monsoon rainfall - DeepDyve CRANの全パッケージ名. zachoverflow | Zach's personal stackoverflow CRAN Packages By Date 求高手指点，我要安装R语言的一个叫pcalg包的，但是安装时有两个相关的包graph和RBGL装不上。安装过程如下： > chooseCRANmirror() > utils:::menuInstallPkgs() Warning: dependencies 'graph', 'RBGL' are n. This notebook demonstrates pre-processing and basic analysis of the mouse retinal cells GSE126783 dataset from Koren et al., 2019. R包的安装错误ERROR: dependency 'plyr' is not available ... - CSDN It runs on a wide variety of UNIX platforms and similar systems, Windows, and MacOS. How to install edgeR Bioconductor package in ubuntu 20.4..? . CRAN Packages By Date Introduction. The package will formally test two curves represented by discrete data sets to be statistically equal or not when the errors of the two curves were assumed either equal or not using the tube formula to calculate the tail probabilities: curvHDR: curvHDR filtering of flow cytometry samples: cusp: Cusp-Catastrophe Model Fitting Using Maximum . Description. CRAN Packages By Name 1: .inet_warning(msg) : installation of package 'genefilter' had non-zero exit status 2: .inet_warning(msg) : installation of package 'locfit' had non-zero exit status 3: .inet_warning(msg) : installation of package 'DESeq2' had non-zero exit… R FAQ - San Diego State University is not owned by a package, and then you notice that there is a newer version of libnsl.so in /usr/lib/x86_64-linux-gnu. warning dependency locfit is not available - 1818lc.se To verify the proper installation of Cairo: 8 commands that help to resolve maven dependency problems Rswarm was originally developed by Lori Dodd and Trevor Reeve with modifications by the Biowulf staff. sudo apt-get install g++. CRANのパッケージは先ほどのmatrixから Package という列を取り出します。. Throughout this book, we will use all of these terms interchangeably. Since ssize_t is not a valid data type on some operating systems . Warning: dependencies 'jtools', 'cmdstanr' are not available also installing the dependencies 'RcppEigen', 'quantreg', 'TMB', 'RcppArmadillo', 'sf', ' filter () picks cases based on their values. 如：. . NOTE ``` Namespaces in Imports field not imported from: 'rARPACK' 'sparseLDA' All declared Imports should be used. This function identify differential expressed genes by calculating an intensity-dependent Z-score. 2. ERROR: dependency 'locfit' is not available for package 'TSA' … i have downloaded the package but i can't use it, when i downloaded it always came up like this, but still it didn't appear in my packages. Only features significant in DE are allowed. bioconductor v3.9.0EdgeR. The great need and utility of the Thailand monsoon forecast and the enhanced prospects . Zscore : Z-scores for identifying differential expression 给定一个二叉树，检查它是否是镜像对称的。 进阶： 你可以运用递归和迭代两种方法解决这个问题吗？ 递归方法 每次传入两个节点，判断是否相同； 迭代方法：队列 队列中先加入两次根节点； 每次出队两个点，判断是否相同； 再把出队的两个点的左右反向交替入队；. Also, I should note that you are still using the old 3.4 R version so installing packages is going to be much harder for you since most of them are going to require compilation. 给定一个二叉树，检查它是否是镜像对称的。 进阶： 你可以运用递归和迭代两种方法解决这个问题吗？ 递归方法 每次传入两个节点，判断是否相同； 迭代方法：队列 队列中先加入两次根节点； 每次出队两个点，判断是否相同； 再把出队的两个点的左右反向交替入队；. enhancedvolcano dependency proj4 failed to install in r 4.1 ```in .inet_warning (msg) : package 'proj4 ' is not available for bioconductor version '3.13' # include your problematic code here with any corresponding output # please also include the results of running the following in an r session sessioninfo ( ) ```r version 4.1.0 (2021-05-18) … 出现这个问题很有可能是你现在用的镜像中未纳入这个包，一是可以多换个源试试。. CS代考计算机代写 decision tree DNA python matlab B tree flex Excel Bayesian ... Let X have a distribution with mean μ and variance σ2 . No: 36 Quantile and median regression for V with respect to U and U with respect to V is available. warning dependency locfit is not available - kwiir.se R包安装出错，提示package'latticeExtra ... - 简书 package 'OpenMx' successfully unpacked and MD5 sums checked. The notebook was written by Kyung Hoi . The errors introduced by local fitting are usually very small, but there are some exceptions. Hi both, ImpulseDE2 is currently not available on the newer bioconductor releases, you can still manually install the package: Clone the GitHub repository first into you local target directory and then install the package via "R CMD INSTALL .". In this setting, we can try to cluster the customers on the basis of the variables measured, in . packages . Unlike in the case of the Indian summer monsoon, the Indian Meteorological Department is required to issue a seasonal forecast of the upcoming monsoon season by the end of April. logistf . DESeq - Open Source Biology & Genetics Interest Group -----ERROR: configuration failed for package ' textshaping ' * removing ' / usr / local / lib / R / 4.0 / site-library / textshaping ' Warning in install.packages: installation of package ' textshaping ' had non-zero exit status ERROR: dependency ' textshaping ' is not available for package ' ragg ' * removing ' / usr . The first choice is less basis set dependent and more reliable with diffuse basis sets. At first I had about 10 errors regarding packages I couldnt install. Index of /bin/windows/contrib/3.5 - RStudio See the help page for available.packages() for more information. R by default uses treatment contrasts in the unordered case, whereas S uses the Helmert ones. Linux安装export包|解决package"export" is not available|R语言|CentOS7为例; CentOS7宿主机设置DHCP服务器分配IPv6给虚拟机 [已解决]CentOS7下安装rjags失败 installation of package 'rjags' had non-zero exit status; Linux下安全删除数据 彻底抹除 使用shred wipe secure-delete srm sdmem sfill Installing older versions of packages - RStudio Support The model does not account for any curvature by quadratic or interaction effects. zh-zhang1984 commented on Oct 30, 2021 DESeq2 installation Error (ERROR: dependency 'locfit' is not available for package 'DESeq2') 0 tsomakiank • 0 @93aec3aa Last seen 2 days ago Greece Hello everybody! This is a bit of a disadvantage, but for this model it is not required. R报错"package '****' is not available (for R version 3.5 ... - CSDN Implements a range of statistical methodology based on the negative binomial distributions, including empirical Bayes estimation, exact tests, generalized linear models and quasi-likelihood tests. This section provides a general overview about R packages. From sensory point of view, it can go either way, depending on how the scales are created for data acquisition. R语言中如何安装pcalg 包 - COS论坛 | 统计之都 | 统计与数据科学论坛 Bioconductor version: Release (3.15) This package provides repository information for the appropriate version of Bioconductor. [WARNING] Unused declared dependencies found: [WARNING] jasperreports:jasperreports:jar:3.5.3:compile. dependent variable. これに加えて、baseのパッケージ（インス トー ル時からRに付属しているパッケージ）はCRAN上にはないので、別途もってくる必要があります。. (2020-02-29) Installing package(s) 'DESeq2' Warning: dependency 'XML' is not available also installing the dependencies 'annotate', 'genefilter', 'geneplotter' . A Poor Man's Dependency Free Recreation of 'dplyr' 2020-10-11 : rENA: Epistemic Network Analysis : 2020-10-11 : tzupdater: Time Zone Database Updater : 2020-10-11 : zipfR: Statistical Models for Word Frequency Distributions : 2020-10-10 : autothresholdr: An R Port of the 'ImageJ' Plugin 'Auto Threshold' 2020-10-10 : cmdfun summarise () reduces multiple values down to a single summary. configure: error: Please use a different compiler. also installing the dependencies 'RcppArmadillo', 'locfit', 'geneplotter' . r - dependency 'Cairo' is not available for package 'ComplexHeatmap' on ... No: 35 RandomForestRFE_sig: Recursively eliminates features from the feature space based on ranking from Random Forrest classifier (retrained woth resampling after each elimination). warning dependency locfit is not available. The easiest way to tell R to use these is via the environment variable R_LIBS which should be a colon-separated list of directories at which R library trees are rooted. Mac R package install error Bioconductor - edgeR PAO-based local correlation treatments [Molpro manual] An Introduction to Statistical Learning with Applications in R This is printed when I am trying: Warning in install.packages : package 'DESeq2' is not available (for R version 3.6.3) Thank you! 最近用RStudio学习R语言，安装数据包的时候总是报错： package '****' is not available (for R version 3.5.2) R报错机制比较粗糙，只要是有错误都会说版本问题。其实错误可能有很多种情况，先记录两种： 1、镜像问题 在RStudio菜单的Tools>Global Options>Packages中，有一个CRAN mir. ERROR installing EnhancedVolcano in R4.1 Improving drought predictability in Arkansas using the ... - Springer Using singscore to predict mutation status in acute myeloid leukemia ... I am trying to install DESeq2 and I keep getting errors. DOI: 10.18129/B9.bioc.BiocVersion Set the appropriate version of Bioconductor packages. RNA-seq analysis with R/Bioconductor · GitHub - Gist The SLF4J will not be included by the maven-assembly-plugin plugin in the final JAR In the present example, I have installed and loaded the caret package. As well as RNA-seq, it be applied to differential signal analysis of other types of genomic data that . installation problem in R4.1.1 · Issue #30 · YosefLab/ImpulseDE2 information is not available—that is, we do not know whether each poten-tial customer is a big spender or not. WARNING: Only g ++ version 4.7.2 or greater can be used with RcppArmadillo. Chapter 6 | Creating R packages - Quantide - R training & consulting G. James et al., An Introduction to Statistical Learning: with Applications in R, . Linux安装export包|解决package"export" is not available|R语言|CentOS7为例; CentOS7宿主机设置DHCP服务器分配IPv6给虚拟机 [已解决]CentOS7下安装rjags失败 installation of package 'rjags' had non-zero exit status; Linux下安全删除数据 彻底抹除 使用shred wipe secure-delete srm sdmem sfill 最近用RStudio学习R语言，安装数据包的时候总是报错：package '****' is not available (for R version 3.5.2) R报错机制比较粗糙，只要是有错误都会说版本问题。。其实错误可能有很多种情况，先记录两种：1、镜像问题在RStudio菜单的Tools>Global Options>Packages中，有一个CRAN mir. It is not clear if there is a seasonal forecast mechanism in place in Thailand. RNA-seq analysis with R/Bioconductor · GitHub - Gist error: dependency 'locfit' is not available for package 'edger' error: dependency . Now, we can apply the library function to load the caret package: library ("caret") # Load caret: This time, it worked without any errors! Unable to install TSA package - General - RStudio Community library (installr) updateR () sea‐surface temperature and sea‐level pressure) in the Indo‐Pacific region. Done Building dependency tree Reading state information. Unfortunately, this is an issue with PC's when R packages (and dependencies) are downloaded to a user (not a root) directory. R/Bioconductor on Biowulf - National Institutes of Health Build Dependencies: elpa, cereal, libxc, fftw, mpi, mkl Link Dependencies: elpa, cereal, libxc, fftw, mpi, mkl Run Dependencies: mpi Description: ABACUS (Atomic-orbital Based Ab-initio Computation at UStc) is an open- source computer code package aiming for large-scale electronic-structure simulations from first principles CRANにないパッケージに依存しているCRANパッケージ - Technically, technophobic. Statistical Learning 0 50 100 200 300 0 10 20 30 40 50 0 20 40 60 80 100 TV Radio Newspaper . Respect Des Parents Citation, Magasin De Hockey Sur Glace Belgique, Recirculation Du Moût, Articles W
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DESeq2 install --- 如何安装R包("RcppArmadillo")？ - 开发者知识库 Following pre-processing using kallisto and bustools and basic QC, the notebook demonstrates some initial analysis. The package will formally test two curves represented by discrete data sets to be statistically equal or not when the errors of the two curves were assumed either equal or not using the tube formula to calculate the tail probabilities: curvHDR: Filtering of Flow Cytometry Samples: cusp: Cusp-Catastrophe Model Fitting Using Maximum Likelihood OmicSelector: Basic Functionality Tutorial. - GitHub Pages Predictors of Thailand summer (August-October) monsoon rainfall are identified from the large‐scale ocean-atmospheric circulation variables (i.e. You do not have to specify the default tree in R_LIBS. 解决：安装R包时，经常提示"package 'readr' is not available (for R version 3.5.1)"的问题 安装R包时，我一般采用两种方法： 方法1： R - kallisto | bustools ERROR: compilation failed for package. Seasonal forecasting of Thailand summer monsoon rainfall - DeepDyve CRANの全パッケージ名. zachoverflow | Zach's personal stackoverflow CRAN Packages By Date 求高手指点，我要安装R语言的一个叫pcalg包的，但是安装时有两个相关的包graph和RBGL装不上。安装过程如下： > chooseCRANmirror() > utils:::menuInstallPkgs() Warning: dependencies 'graph', 'RBGL' are n. This notebook demonstrates pre-processing and basic analysis of the mouse retinal cells GSE126783 dataset from Koren et al., 2019. R包的安装错误ERROR: dependency 'plyr' is not available ... - CSDN It runs on a wide variety of UNIX platforms and similar systems, Windows, and MacOS. How to install edgeR Bioconductor package in ubuntu 20.4..? . CRAN Packages By Date Introduction. The package will formally test two curves represented by discrete data sets to be statistically equal or not when the errors of the two curves were assumed either equal or not using the tube formula to calculate the tail probabilities: curvHDR: curvHDR filtering of flow cytometry samples: cusp: Cusp-Catastrophe Model Fitting Using Maximum . Description. CRAN Packages By Name 1: .inet_warning(msg) : installation of package 'genefilter' had non-zero exit status 2: .inet_warning(msg) : installation of package 'locfit' had non-zero exit status 3: .inet_warning(msg) : installation of package 'DESeq2' had non-zero exit… R FAQ - San Diego State University is not owned by a package, and then you notice that there is a newer version of libnsl.so in /usr/lib/x86_64-linux-gnu. warning dependency locfit is not available - 1818lc.se To verify the proper installation of Cairo: 8 commands that help to resolve maven dependency problems Rswarm was originally developed by Lori Dodd and Trevor Reeve with modifications by the Biowulf staff. sudo apt-get install g++. CRANのパッケージは先ほどのmatrixから Package という列を取り出します。. Throughout this book, we will use all of these terms interchangeably. Since ssize_t is not a valid data type on some operating systems . Warning: dependencies 'jtools', 'cmdstanr' are not available also installing the dependencies 'RcppEigen', 'quantreg', 'TMB', 'RcppArmadillo', 'sf', ' filter () picks cases based on their values. 如：. . NOTE ``` Namespaces in Imports field not imported from: 'rARPACK' 'sparseLDA' All declared Imports should be used. This function identify differential expressed genes by calculating an intensity-dependent Z-score. 2. ERROR: dependency 'locfit' is not available for package 'TSA' … i have downloaded the package but i can't use it, when i downloaded it always came up like this, but still it didn't appear in my packages. Only features significant in DE are allowed. bioconductor v3.9.0EdgeR. The great need and utility of the Thailand monsoon forecast and the enhanced prospects . Zscore : Z-scores for identifying differential expression 给定一个二叉树，检查它是否是镜像对称的。 进阶： 你可以运用递归和迭代两种方法解决这个问题吗？ 递归方法 每次传入两个节点，判断是否相同； 迭代方法：队列 队列中先加入两次根节点； 每次出队两个点，判断是否相同； 再把出队的两个点的左右反向交替入队；. Also, I should note that you are still using the old 3.4 R version so installing packages is going to be much harder for you since most of them are going to require compilation. 给定一个二叉树，检查它是否是镜像对称的。 进阶： 你可以运用递归和迭代两种方法解决这个问题吗？ 递归方法 每次传入两个节点，判断是否相同； 迭代方法：队列 队列中先加入两次根节点； 每次出队两个点，判断是否相同； 再把出队的两个点的左右反向交替入队；. enhancedvolcano dependency proj4 failed to install in r 4.1 ```in .inet_warning (msg) : package 'proj4 ' is not available for bioconductor version '3.13' # include your problematic code here with any corresponding output # please also include the results of running the following in an r session sessioninfo ( ) ```r version 4.1.0 (2021-05-18) … 出现这个问题很有可能是你现在用的镜像中未纳入这个包，一是可以多换个源试试。. CS代考计算机代写 decision tree DNA python matlab B tree flex Excel Bayesian ... Let X have a distribution with mean μ and variance σ2 . No: 36 Quantile and median regression for V with respect to U and U with respect to V is available. warning dependency locfit is not available - kwiir.se R包安装出错，提示package'latticeExtra ... - 简书 package 'OpenMx' successfully unpacked and MD5 sums checked. The notebook was written by Kyung Hoi . The errors introduced by local fitting are usually very small, but there are some exceptions. Hi both, ImpulseDE2 is currently not available on the newer bioconductor releases, you can still manually install the package: Clone the GitHub repository first into you local target directory and then install the package via "R CMD INSTALL .". In this setting, we can try to cluster the customers on the basis of the variables measured, in . packages . Unlike in the case of the Indian summer monsoon, the Indian Meteorological Department is required to issue a seasonal forecast of the upcoming monsoon season by the end of April. logistf . DESeq - Open Source Biology & Genetics Interest Group -----ERROR: configuration failed for package ' textshaping ' * removing ' / usr / local / lib / R / 4.0 / site-library / textshaping ' Warning in install.packages: installation of package ' textshaping ' had non-zero exit status ERROR: dependency ' textshaping ' is not available for package ' ragg ' * removing ' / usr . The first choice is less basis set dependent and more reliable with diffuse basis sets. At first I had about 10 errors regarding packages I couldnt install. Index of /bin/windows/contrib/3.5 - RStudio See the help page for available.packages() for more information. R by default uses treatment contrasts in the unordered case, whereas S uses the Helmert ones. Linux安装export包|解决package"export" is not available|R语言|CentOS7为例; CentOS7宿主机设置DHCP服务器分配IPv6给虚拟机 [已解决]CentOS7下安装rjags失败 installation of package 'rjags' had non-zero exit status; Linux下安全删除数据 彻底抹除 使用shred wipe secure-delete srm sdmem sfill Installing older versions of packages - RStudio Support The model does not account for any curvature by quadratic or interaction effects. zh-zhang1984 commented on Oct 30, 2021 DESeq2 installation Error (ERROR: dependency 'locfit' is not available for package 'DESeq2') 0 tsomakiank • 0 @93aec3aa Last seen 2 days ago Greece Hello everybody! This is a bit of a disadvantage, but for this model it is not required. R报错"package '****' is not available (for R version 3.5 ... - CSDN Implements a range of statistical methodology based on the negative binomial distributions, including empirical Bayes estimation, exact tests, generalized linear models and quasi-likelihood tests. This section provides a general overview about R packages. From sensory point of view, it can go either way, depending on how the scales are created for data acquisition. R语言中如何安装pcalg 包 - COS论坛 | 统计之都 | 统计与数据科学论坛 Bioconductor version: Release (3.15) This package provides repository information for the appropriate version of Bioconductor. [WARNING] Unused declared dependencies found: [WARNING] jasperreports:jasperreports:jar:3.5.3:compile. dependent variable. これに加えて、baseのパッケージ（インス トー ル時からRに付属しているパッケージ）はCRAN上にはないので、別途もってくる必要があります。. (2020-02-29) Installing package(s) 'DESeq2' Warning: dependency 'XML' is not available also installing the dependencies 'annotate', 'genefilter', 'geneplotter' . A Poor Man's Dependency Free Recreation of 'dplyr' 2020-10-11 : rENA: Epistemic Network Analysis : 2020-10-11 : tzupdater: Time Zone Database Updater : 2020-10-11 : zipfR: Statistical Models for Word Frequency Distributions : 2020-10-10 : autothresholdr: An R Port of the 'ImageJ' Plugin 'Auto Threshold' 2020-10-10 : cmdfun summarise () reduces multiple values down to a single summary. configure: error: Please use a different compiler. also installing the dependencies 'RcppArmadillo', 'locfit', 'geneplotter' . r - dependency 'Cairo' is not available for package 'ComplexHeatmap' on ... No: 35 RandomForestRFE_sig: Recursively eliminates features from the feature space based on ranking from Random Forrest classifier (retrained woth resampling after each elimination). warning dependency locfit is not available. The easiest way to tell R to use these is via the environment variable R_LIBS which should be a colon-separated list of directories at which R library trees are rooted. Mac R package install error Bioconductor - edgeR PAO-based local correlation treatments [Molpro manual] An Introduction to Statistical Learning with Applications in R This is printed when I am trying: Warning in install.packages : package 'DESeq2' is not available (for R version 3.6.3) Thank you! 最近用RStudio学习R语言，安装数据包的时候总是报错： package '****' is not available (for R version 3.5.2) R报错机制比较粗糙，只要是有错误都会说版本问题。其实错误可能有很多种情况，先记录两种： 1、镜像问题 在RStudio菜单的Tools>Global Options>Packages中，有一个CRAN mir. ERROR installing EnhancedVolcano in R4.1 Improving drought predictability in Arkansas using the ... - Springer Using singscore to predict mutation status in acute myeloid leukemia ... I am trying to install DESeq2 and I keep getting errors. DOI: 10.18129/B9.bioc.BiocVersion Set the appropriate version of Bioconductor packages. RNA-seq analysis with R/Bioconductor · GitHub - Gist The SLF4J will not be included by the maven-assembly-plugin plugin in the final JAR In the present example, I have installed and loaded the caret package. As well as RNA-seq, it be applied to differential signal analysis of other types of genomic data that . installation problem in R4.1.1 · Issue #30 · YosefLab/ImpulseDE2 information is not available—that is, we do not know whether each poten-tial customer is a big spender or not. WARNING: Only g ++ version 4.7.2 or greater can be used with RcppArmadillo. Chapter 6 | Creating R packages - Quantide - R training & consulting G. James et al., An Introduction to Statistical Learning: with Applications in R, . Linux安装export包|解决package"export" is not available|R语言|CentOS7为例; CentOS7宿主机设置DHCP服务器分配IPv6给虚拟机 [已解决]CentOS7下安装rjags失败 installation of package 'rjags' had non-zero exit status; Linux下安全删除数据 彻底抹除 使用shred wipe secure-delete srm sdmem sfill 最近用RStudio学习R语言，安装数据包的时候总是报错：package '****' is not available (for R version 3.5.2) R报错机制比较粗糙，只要是有错误都会说版本问题。。其实错误可能有很多种情况，先记录两种：1、镜像问题在RStudio菜单的Tools>Global Options>Packages中，有一个CRAN mir. It is not clear if there is a seasonal forecast mechanism in place in Thailand. RNA-seq analysis with R/Bioconductor · GitHub - Gist error: dependency 'locfit' is not available for package 'edger' error: dependency . Now, we can apply the library function to load the caret package: library ("caret") # Load caret: This time, it worked without any errors! Unable to install TSA package - General - RStudio Community library (installr) updateR () sea‐surface temperature and sea‐level pressure) in the Indo‐Pacific region. Done Building dependency tree Reading state information. Unfortunately, this is an issue with PC's when R packages (and dependencies) are downloaded to a user (not a root) directory. R/Bioconductor on Biowulf - National Institutes of Health Build Dependencies: elpa, cereal, libxc, fftw, mpi, mkl Link Dependencies: elpa, cereal, libxc, fftw, mpi, mkl Run Dependencies: mpi Description: ABACUS (Atomic-orbital Based Ab-initio Computation at UStc) is an open- source computer code package aiming for large-scale electronic-structure simulations from first principles CRANにないパッケージに依存しているCRANパッケージ - Technically, technophobic. Statistical Learning 0 50 100 200 300 0 10 20 30 40 50 0 20 40 60 80 100 TV Radio Newspaper .

Respect Des Parents Citation, Magasin De Hockey Sur Glace Belgique, Recirculation Du Moût, Articles W

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